Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs34625609 chr2:241766873 C/T 0.000189 488 29.4 32.7 32.63 KM Plot
PRAD rs34630219 chr16:5003436 C/T 4.84E-5 475 31.27 29.63 27.77 KM Plot
PRAD rs34669484 chr8:71962261 A/G 3.98E-5 494 24.27 30.77 31.23 KM Plot
PRAD rs34678364 chr2:178800097 T/G 4.51E-5 492 30.73 31.93 20.48 KM Plot
PRAD rs34679468 chr2:241774804 C/T 7.4E-6 481 29.32 32.5 30.38 KM Plot
PRAD rs34695799 chr8:143380236 G/A 6.55E-5 483 30.93 31.87 28.13 KM Plot
PRAD rs34700572 chr2:239100584 C/A 9.24E-10 471 31.68 28.93 30.45 KM Plot
PRAD rs34702628 chr7:6763386 G/A 3.44E-7 488 31.18 26.7 50.03 KM Plot
PRAD rs34705845 chr1:93614709 T/TGAA 1.11E-8 492 9.17 28.13 31.37 KM Plot
PRAD rs34717744 chr2:178797523 C/T 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs34730405 chr2:107434931 T/TA 1.38E-5 491 30.93 30.7 32.63 KM Plot
PRAD rs34735 chr5:96166064 A/G 7.17E-5 494 31.37 30.78 24.13 KM Plot
PRAD rs34747248 chr2:178800104 A/G 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs34751899 chr8:71552302 C/A 4.75E-5 492 31.08 31 24.27 KM Plot
PRAD rs34763766 chr4:98732692 TA/T 4.49E-6 491 31.13 28.98 45.12 KM Plot